Аңдатпа
(L.) Moq. (sand rice) is a drought-tolerant psammophytic species with high potential as a climate-resilient food crop due to its nutritional value and adaptation to arid environments. This study evaluates morphometric and biochemical variation in seeds from five natural populations across the deserts of Kazakhstan to assess their breeding potential. Seed morphometric traits showed moderate variability (CVs of 4.71-17.98%), with strong positive correlations among seed length, width, and thousand-seed weight, indicating coordinated development. In contrast, biochemical traits, particularly amino acid composition, exhibited substantially higher variability (CV up to 174.9%), reflecting metabolic flexibility under different environmental conditions. Among the amino acids reliably quantified in this study, histidine was the most abundant, while cysteine, tyrosine, and alanine showed high variability. Total protein content remained relatively stable, reaching up to 34.96% in superior accessions. Multivariate analyses revealed significant population differentiation: Akt1 was the most distinct, whereas Alm1 exhibited superior seed size and mass. Weak correlations between morphometric and biochemical traits suggest their partial independence. Integrated multivariate evaluation identified Akt2 and Alm1 as the most promising populations for breeding. Overall, the observed variation highlights strong potential to select genotypes that combine improved seed size with favorable biochemical characteristics, based on the five amino acids quantified above the LOQ, thereby supporting breeding and domestication efforts.